PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000559G0630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 269aa    MW: 29207.6 Da    PI: 5.0931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000559G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-21134183255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAaka+++a+ +++g
  PH01000559G0630 134 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAIEFRG 183
                      8********.**********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.132134191IPR001471AP2/ERF domain
PfamPF008472.9E-14134183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-32134191IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23134192IPR016177DNA-binding domain
SMARTSM003801.5E-37134197IPR001471AP2/ERF domain
PRINTSPR003672.9E-11135146IPR001471AP2/ERF domain
CDDcd000182.67E-29137191No hitNo description
PRINTSPR003672.9E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MANRIPTTMG ANQEYVIRFD GQFEDPSPSS ASAEPPPQPA VAAPFAGRVI SPEQEHSVIV  60
AALLHVISGY TTAPPEIFPA ARGEVCQVCG MERCLGCEFF AGEAEVIALD GGAEKVAAAA  120
AAGGQRRRRK KKNKYRGVRQ RPWGKWAAEI RDPRRAVRKW LGTFDTAEEA AKAYDRAAIE  180
FRGPRAKLNF PFPEQVGAAH DDSNVDGSAA AKSDTLSPSP CSADADERAQ QACQRGGEET  240
GDQLWEGLQD LMKMDEGELW FPRTSNSWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-21131197269ATERF1
2gcc_A1e-21131197269ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131RRRRKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946090.0FP094609.1 Phyllostachys edulis cDNA clone: bphylf047i05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.11e-121PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ064e-37EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLK3YJ181e-121K3YJ18_SETIT; Uncharacterized protein
STRINGSi014237m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-28redox responsive transcription factor 1